Azido-PEG3-S-PEG4-t-butyl ester

 CAS No.: 2055041-19-3  Cat No.: BP-500442  Purity: 98% 4.5  

Azido-PEG3-S-PEG4-t-butyl ester is a heterobifunctional polyethylene glycol (PEG) linker featuring an azide handle for bioorthogonal conjugation, a thioether (S) linkage to connect PEG segments, and a terminal acid protected as a tert-butyl ester. The PEG3–S–PEG4 architecture provides a flexible, hydrophilic spacer that can reduce steric interference between a targeting ligand and an E3 ligase recruiter in PROTAC constructs, while the azide enables efficient attachment via azide–alkyne cycloaddition or related click chemistries to introduce the linker into complex molecular scaffolds. The thioether connection offers chemical stability under typical synthetic conditions and maintains conformational freedom across the linker. In targeted protein degradation research, this linker is valuable for systematically tuning linker length, polarity, and attachment geometry to optimize ternary complex formation and degradation potency. The tert-butyl ester facilitates controlled downstream functionalization, such as conversion to a carboxylate for further coupling strategies.

Azido-PEG3-S-PEG4-t-butyl ester

Structure of 2055041-19-3

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Category
PROTAC Linker
Molecular Formula
C₂₃H₄₅N₃O₉S
Molecular Weight
539.68

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
tert-butyl 3-[2-[2-[2-[2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethylsulfanyl]ethoxy]ethoxy]ethoxy]ethoxy]propanoate
Synonyms
tert-butyl 1-azido-3,6,9,15,18,21,24-heptaoxa-12-thiaheptacosan-27-oate
InChI Key
UPJKMGHIPNYNEY-UHFFFAOYSA-N
InChI
InChI=1S/C23H45N3O9S/c1-23(2,3)35-22(27)4-6-28-8-10-30-12-13-32-15-17-34-19-21-36-20-18-33-16-14-31-11-9-29-7-5-25-26-24/h4-21H2,1-3H3
SMILES
CC(C)(C)OC(=O)CCOCCOCCOCCOCCSCCOCCOCCOCCN=[N+]=[N-]

Azido-PEG3-S-PEG4-t-butyl ester is a bifunctional polyethylene glycol-based PROTAC linker designed to combine solubility-enhancing PEG segments with a chemically addressable azide handle and a protected thiol/ester functionality for controlled conjugation. Its flexible, ether-rich scaffold supports productive ternary complex formation by improving linker reach and reducing steric constraints. The azide enables selective bioorthogonal attachment to complementary partners, while the protected group supports stepwise assembly. Detailed structural and reactivity considerations are provided below.

Structure: The linker contains an azide-bearing terminus connected through short PEG chains, incorporating multiple ether linkages that confer conformational flexibility and hydrophilicity. A sulfur-containing linkage connects PEG segments, and a tert-butyl ester provides a stable, acid-labile protecting group for subsequent functionalization.

Reactivity: PROTAC construction typically uses the azide as a click handle, most commonly via copper-free or copper-catalyzed azide–alkyne cycloaddition with an appropriately functionalized partner. The tert-butyl ester is generally introduced or maintained under neutral conditions and can be deprotected using mild acid to reveal a reactive carboxylate for coupling. Linker conjugations are commonly performed in polar organic or mixed solvent systems compatible with PEG solubility, with reaction monitoring by standard analytical methods.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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