Biotin-PEG12-Mal

 Cat No.: BP-502120 4.5  

Biotin-PEG12-Mal is a heterobifunctional PROTAC linker featuring a biotin moiety connected through a long, hydrophilic polyethylene glycol chain to a terminal maleimide group. The PEG12 spacer provides conformational flexibility and improves aqueous solubility, while the maleimide enables selective conjugation to thiol-containing partners via Michael-type addition, forming a stable thioether linkage. In targeted protein degradation workflows, this linker can be used to incorporate a biotin handle for affinity capture or enrichment of PROTAC assemblies, while the maleimide serves as a reactive “attachment point” to couple the linker to cysteine-bearing ligands, scaffolds, or protein-derived components. Its modular design supports experimental optimization of multicomponent degraders, facilitates pull-down and downstream analysis, and helps researchers track or isolate specific conjugates during synthesis and characterization.

Biotin-PEG12-Mal

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PROTAC Linker
Molecular Formula
C₄₃H₇₅N₅O₁₇S
Molecular Weight
966.14

* For research and manufacturing use only. Not for human or clinical use.

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Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-N-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-(2,5-dioxopyrrol-1-yl)propanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]pentanamide
InChI Key
WAOKCINZZZEVIC-LIGBGABDSA-N
InChI
InChI=1S/C43H75N5O17S/c49-38(4-2-1-3-37-42-36(35-66-37)46-43(53)47-42)44-8-11-54-13-15-56-17-19-58-21-23-60-25-27-62-29-31-64-33-34-65-32-30-63-28-26-61-24-22-59-20-18-57-16-14-55-12-9-45-39(50)7-10-48-40(51)5-6-41(48)52/h5-6,36-37,42H,1-4,7-35H2,(H,44,49)(H,45,50)(H2,46,47,53)/t36-,37-,42-/m0/s1
SMILES
C1C2C(C(S1)CCCCC(=O)NCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCNC(=O)CCN3C(=O)C=CC3=O)NC(=O)N2

Biotin-PEG12-Mal is a biotin-functionalized polyethylene glycol linker bearing a maleimide handle, designed for modular PROTAC construction and related targeted conjugation workflows. The PEG segment provides conformational flexibility and improved solubility, while the maleimide enables efficient chemoselective coupling to thiol-containing ligands under mild conditions. The biotin moiety further supports affinity-based capture and characterization of assembled conjugates. Detailed structural and reactivity considerations are provided below.

Structure: The linker comprises a biotin group connected through a PEG chain to a maleimide electrophile. It contains a cyclic imide (maleimide) for thiol reactivity, ether linkages within the PEG for hydrophilicity, and stable carbon–carbon and carbon–heteroatom bonds that support robust conjugate formation.

Reactivity: Maleimide groups typically undergo rapid Michael-type addition with free thiols to form stable thioether linkages. For PROTAC assembly, thiol-bearing components are reacted with the maleimide under mildly basic, aqueous-compatible conditions to maintain thiol nucleophilicity while minimizing side reactions such as hydrolysis. Commonly used solvents include buffered aqueous media; catalysts are generally unnecessary, and careful control of pH and thiol stoichiometry is recommended for reproducible coupling.

Stock concentration: *
Desired final volume: *
Desired concentration: *

L

* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
g/mol
g

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