mPEG5-acetic acid is a methoxy-terminated polyethylene glycol (PEG) derivative bearing an acetic acid functionality, providing a short, water-soluble PEG chain with a defined terminal carboxyl group for chemical conjugation. Structurally, it combines a flexible ethylene glycol backbone that can reduce nonspecific hydrophobic interactions and improve aqueous handling with a carboxylic acid handle suitable for amide coupling, esterification, or activation-based linkage strategies. In PROTAC and targeted protein degradation workflows, such PEG–acid linkers are commonly used to tune solubility, mitigate aggregation of bulky conjugates, and modulate the effective distance and local microenvironment between the ligand-binding warhead and the E3-recruiting module. The short PEG length can help preserve productive ternary-complex formation while improving formulation stability for in vitro assays, making mPEG5-acetic acid a practical building block for constructing degraders and evaluating how linker polarity and termini chemistry influence degradation efficiency.
Structure of 16142-03-3
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This mPEG5-acetic acid linker is designed to provide a hydrophilic, biocompatible polyethylene glycol segment that can be used to tune solubility, reduce nonspecific interactions, and improve handling of PROTAC conjugates. Its acetate functionality enables straightforward linkage to targeting or recruiting modules, supporting the modular assembly of targeted protein degraders. The following sections describe the structure and practical reactivity considerations in detail.
Structure: The molecule comprises an mPEG chain terminated with an acetic acid group, featuring ether linkages within the PEG backbone and a terminal carboxylic acid. The combination yields a polar, water-compatible scaffold with hydrogen-bonding capacity, supporting favorable solvation and reduced aggregation in conjugation workflows.
Reactivity: The terminal carboxylic acid is suitable for standard PROTAC linker coupling strategies that form amide or ester linkages. Typical approaches use carboxyl-activation reagents and amine nucleophiles under mild, anhydrous conditions to promote efficient coupling while minimizing PEG degradation. Commonly used solvents include polar aprotic media, and base or coupling catalysts are selected to maintain compatibility with PEG and preserve functional group integrity during synthesis.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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