2-[2-(Benzyloxy)ethoxy]ethanol is a flexible, ether-rich diethylene glycol derivative bearing a benzyloxy substituent, providing a hydrophilic, conformationally adaptable linker scaffold with an alcohol terminus suitable for conjugation chemistry. In PROTAC construction, such linkers are commonly used to tune the spatial arrangement and effective reach between the target-binding ligand and the E3-ligase recruiting moiety, while the multiple ether oxygen atoms can enhance solvation and influence local polarity, often improving productive ternary complex formation. The terminal hydroxyl enables straightforward functionalization (e.g., activation to form ester or ether derivatives) to connect to other PROTAC fragments through stable covalent bonds, allowing systematic structure–activity relationship studies. This compound is therefore valuable for researchers seeking modular linker options to optimize degradation potency and selectivity by varying linker length, flexibility, and polarity in targeted protein degradation experiments.
Structure of 2050-25-1
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2-[2-(Benzyloxy)ethoxy]ethanol, provides a flexible polyether scaffold incorporating an ether-linked benzyloxy substituent and a terminal hydroxymethyl alcohol. Such linkers are widely used to tune linker length, solubility, and conformational freedom between a ligand and an E3-recruiting element in targeted protein degradation constructs. The sections below describe its structure and practical reactivity considerations for PROTAC assembly.
Structure: The molecule is a benzyloxy-terminated polyether featuring multiple ether linkages and a primary alcohol. Aromatic benzyl ether functionality contributes to chemical stability, while the ethylene glycol–like segments provide conformational flexibility and favorable polarity for PROTAC solubility and linkage design.
Reactivity: The terminal primary alcohol enables standard PROTAC linker functionalization via alcohol-to-derivative transformations commonly used in bioconjugation and PROTAC synthesis, including ester or carbamate formation under coupling conditions. Protective-group strategies compatible with benzyl ethers can be applied when sequential assembly is required. Typical approaches employ activated carboxylic acids or carbamoylating reagents in polar organic solvents, with base or acid catalysis selected according to the electrophile and desired linkage chemistry.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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