Amino-PEG8-t-butyl ester is a PEG-based linker featuring a terminal primary amine for subsequent bioconjugation and a protected carboxyl group provided as a tert-butyl ester. Structurally, it comprises an oligo(ethylene glycol) chain of moderate length that confers aqueous solubility, conformational flexibility, and reduced steric interference, while the amine enables robust coupling to electrophilic handles on ligands or to activated carboxylate/activated ester partners. In PROTAC and targeted protein degradation workflows, such linkers are used to spatially separate the ligand-binding moieties from the E3-recruiting or substrate-binding components, improving productive formation of the ternary complex and tuning degradation efficiency by controlling effective linker length and dynamics. The tert-butyl ester protection allows selective deprotection under standard conditions to generate a reactive carboxylate for further conjugation, supporting modular synthesis of degraders. Overall, it is a practical, research-grade PEG linker for systematic optimization of targeted degradation constructs.
Structure of 756526-06-4
* For research and manufacturing use only. Not for human or clinical use.
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This Amino-PEG8-t-butyl ester linker is designed to support modular PROTAC assembly by providing a flexible polyethylene glycol spacer and a protected carboxyl functionality for controlled conjugation. Its ether-rich, hydrophilic architecture can improve solubility and reduce nonspecific interactions, while the ester handle enables reliable attachment to ligands under standard synthetic workflows. The sections below describe the structure and practical reactivity considerations for PROTAC linker integration.
Structure: The linker comprises an amino-functional group connected to a polyethylene glycol chain terminated with a tert-butyl ester. It features repeating ether linkages that confer flexibility and hydrophilicity, alongside an amide-forming potential at the amino terminus and an acid-labile ester at the carboxyl end.
Reactivity: The tert-butyl ester is commonly employed as a protected carboxyl group that can be deprotected under acid conditions to generate a free carboxylic acid for subsequent coupling. PROTAC construction typically uses amide-bond-forming reactions between the liberated acid and complementary amines, employing standard coupling reagents and base in polar aprotic solvents. The amino group can also be used for selective conjugation strategies, depending on orthogonal protection and chemoselectivity requirements.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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