DBCO-PEG10-DBCO

 Cat No.: BP-501844 4.5  

DBCO-PEG10-DBCO is a bifunctional polyethylene glycol (PEG) linker bearing two strained cyclooctyne (DBCO) groups at the termini, separated by a PEG chain of intermediate length that provides aqueous solubility and flexibility. Structurally, it enables copper-free strain-promoted azide–alkyne cycloaddition (SPAAC) to efficiently conjugate two azide-functional partners in a single step, forming stable triazole linkages without the need for cytotoxic copper catalysts. In PROTAC and targeted degradation workflows, this linker is particularly useful for modular assembly of heterobifunctional constructs, allowing researchers to connect an E3 ligase ligand and a target-binding moiety (or other functional handles) through orthogonal, high-yield click chemistry while minimizing steric constraints through the PEG spacer. Its PEG-based spacer and dual DBCO reactivity make it valuable for optimizing linker length, maintaining binding accessibility, and generating reproducible conjugates for mechanistic studies and degradation efficacy screening.

DBCO-PEG10-DBCO

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PROTAC Linker
Molecular Formula
C₆₀H₇₄N₄O₁₄
Molecular Weight
1075.25

* For research and manufacturing use only. Not for human or clinical use.

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Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
N-[3-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-3-oxopropyl]-3-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-[[3-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-3-oxopropyl]amino]-3-oxopropoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanamide
InChI Key
YKWYKWQNOGPNML-UHFFFAOYSA-N
InChI
InChI=1S/C60H74N4O14/c65-57(61-25-21-59(67)63-47-53-13-3-1-9-49(53)17-19-51-11-5-7-15-55(51)63)23-27-69-29-31-71-33-35-73-37-39-75-41-43-77-45-46-78-44-42-76-40-38-74-36-34-72-32-30-70-28-24-58(66)62-26-22-60(68)64-48-54-14-4-2-10-50(54)18-20-52-12-6-8-16-56(52)64/h1-16H,21-48H2,(H,61,65)(H,62,66)
SMILES
C1C2=CC=CC=C2C#CC3=CC=CC=C3N1C(=O)CCNC(=O)CCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCC(=O)NCCC(=O)N4CC5=CC=CC=C5C#CC6=CC=CC=C64

This DBCO-PEG10-DBCO linker is a bifunctional, strain-promoted cyclooctyne (DBCO)–PEG conjugate designed for efficient assembly of PROTACs and related targeted degradation constructs. It enables rapid, bioorthogonal conjugation through copper-free click chemistry, offering high coupling efficiency and compatibility with sensitive biomolecule-binding ligands. Its PEG spacer improves solubility and can help tune effective linker length and flexibility. Detailed structural and reactivity considerations are provided below.

Structure: The molecule contains two DBCO groups connected by a poly(ethylene glycol) chain, providing a flexible, hydrophilic spacer between strained cyclooctyne moieties. It features ether linkages within the PEG segment and strained alkyne functionality suited for cycloaddition chemistry. Overall, it is designed to be soluble and conjugation-ready.

Reactivity: DBCO groups typically undergo strain-promoted azide–alkyne cycloaddition with azide-bearing partners under copper-free conditions. For PROTAC assembly, this linker is commonly used to connect azide-functional warheads or recruiting ligands to complementary azide/alkyne handles, forming stable triazole linkages. Reactions are generally performed in polar organic or aqueous buffer systems compatible with the azide substrate, with mild temperatures and no copper catalyst required.

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Desired final volume: *
Desired concentration: *

L

* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
g/mol
g

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