mPEG3-CH2CH2COONHS ester is an NHS-activated polyethylene glycol (PEG) linker featuring a short, flexible ethylene glycol–based chain terminated with an N-hydroxysuccinimide ester. The PEG segment provides hydrophilicity and steric shielding, improving aqueous solubility and reducing nonspecific interactions, while the terminal NHS ester enables efficient, chemoselective amide-bond formation with primary amines on PROTAC-relevant ligands (e.g., lysine-containing peptides, antibody fragments, or amine-functionalized small molecules). In PROTAC design, this linker serves as a conjugation handle to connect two components through a stable amide linkage, allowing researchers to tune spatial separation and overall physicochemical properties that can strongly influence ternary complex formation and targeted protein degradation efficiency. Its short PEG length is particularly useful when maintaining compact linker architectures while still benefiting from PEG-mediated solubility and reduced aggregation in experimental workflows.
Structure of 622405-78-1
* For research and manufacturing use only. Not for human or clinical use.
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This mPEG3-CH2CH2COONHS ester is a polyethylene glycol-based activated ester designed for efficient conjugation steps in PROTAC construction. Its PEG segment supports solubility and can improve bioconjugation handling, while the NHS-activated carboxylate enables rapid coupling to nucleophilic partners under mild conditions. The linker is therefore well suited for assembling PROTAC intermediates and for tailoring linker–ligand connectivity; detailed structural and reactivity guidance is provided below.
Structure: The molecule comprises a methoxy-terminated PEG chain linked through an ethylene spacer to an NHS-activated carboxylate. It contains ether linkages within the PEG backbone, a flexible alkyl spacer, and an activated ester functionality capable of acyl transfer. Overall, it is a polar, water-compatible conjugation reagent.
Reactivity: The NHS ester undergoes nucleophilic acyl substitution with primary amines or other suitable nucleophiles to form stable amide bonds, releasing NHS as the leaving group. Conjugations are typically performed in buffered aqueous or mixed aqueous/organic conditions at controlled pH, often using mild base to maintain nucleophile availability. Reactions proceed without specialized catalysts, but exclusion of excessive competing nucleophiles and careful timing are recommended to preserve activation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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