SLF

 CAS No.: 195513-96-3  Cat No.: BP-300079  Purity: ≥98% 4.5  

SLF is a synthetic FKBP ligand that binds FKBP-family immunophilins and is widely used as a modular recognition element in chemically induced proximity systems. Its compact structure and defined FKBP-binding mode make it suitable for incorporation into PROTAC-like molecules, molecular glues, and degrader constructs that use FKBP recognition as a controllable protein-binding handle. In a targeted degradation design, SLF can be attached to a linker and an E3 ligase recruiter to position FKBP or FKBP-fusion proteins near ubiquitination machinery. The intended mechanism is ligand-directed proximity, ubiquitination of the recruited protein, and proteasome-dependent depletion when a productive complex is formed. SLF is useful for FKBP12 degradation studies, fusion-protein degrader models, induced-proximity platform development, linker exit-vector evaluation, and chemical biology workflows requiring selective recruitment of engineered or endogenous immunophilin-associated proteins.

SLF

Structure of 195513-96-3

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Ligand for Target Protein
Molecular Formula
C30H40N2O6
Molecular Weight
524.66
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Purity
≥98%
IUPACName
[(1R)-1-(3-aminophenyl)-3-(3,4-dimethoxyphenyl)propyl] (2S)-1-(3,3-dimethyl-2-oxopentanoyl)piperidine-2-carboxylate
Synonyms
SLF Exclusive; Synthetic Ligand of FKBP
InChI Key
IIDSDBBDZNDWCN-BJKOFHAPSA-N
InChI
InChI=1S/C30H40N2O6/c1-6-30(2,3)27(33)28(34)32-17-8-7-12-23(32)29(35)38-24(21-10-9-11-22(31)19-21)15-13-20-14-16-25(36-4)26(18-20)37-5/h9-11,14,16,18-19,23-24H,6-8,12-13,15,17,31H2,1-5H3/t23-,24+/m0/s1
SMILES
CCC(C)(C)C(=O)C(=O)N1CCCCC1C(=O)OC(CCC2=CC(=C(C=C2)OC)OC)C3=CC(=CC=C3)N
Mechanism

Target: This ligand targets FK506-binding protein FKBP12 in biochemical or cellular target-engagement studies.

Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for FK506-binding protein FKBP12. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings FK506-binding protein FKBP12 into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.

Applications

• SLF-Based PROTAC Development: SLF can be used as a targeting ligand within PROTAC architectures to engage a chosen E3 ligase and recruit the target protein for ubiquitination. This enables systematic testing of linker length, attachment chemistry, and ternary-complex stabilization to drive efficient proteasome-dependent degradation in cellular models.

• Target Protein Degradation Profiling: Incorporate SLF into PROTAC constructs to evaluate degradation kinetics and dose–response behavior of the intended protein. Researchers can quantify loss of target abundance, monitor recovery after washout, and compare degradation versus inhibition to identify whether SLF-driven engagement produces sustained, mechanism-based protein turnover.

• E3 Ligase Recruitment Optimization: Use SLF as a modular component to optimize E3 ligase recruitment strength and specificity in targeted protein degradation. By varying SLF conjugation sites and linker properties, investigators can tune ternary-complex formation, reduce off-target ubiquitination, and improve degradation selectivity across related protein family members.

• Mechanistic Studies of Ubiquitination: SLF-containing PROTACs support mechanistic interrogation of ubiquitin transfer and proteasome dependence. Experiments such as ubiquitination assays, proteasome inhibition, and competition with pathway ligands can clarify whether SLF-mediated recruitment effectively drives ubiquitin chain formation and productive commitment to degradation.

• Proteome-Wide Degradation Mapping: Apply SLF-based PROTACs to study broader degradation outcomes using proteomics workflows. Quantitative mass spectrometry can reveal on-target degradation efficiency, identify unexpected off-targets, and correlate degradation signatures with SLF-driven binding features, guiding iterative PROTAC redesign for improved selectivity and potency.

1. Signaling pathways influencing SLF and c-kit-mediated survival and proliferation
Stuart A Berger Immunol Res . 2006;35(1-2):1-12. doi: 10.1385/IR:35:1:1.
Steel factor (SLF) and c-Kit are a ligand-receptor pair that regulates growth and activation of a variety of hemopoietic and non-hemopoietic cells. This review describes our work investigating downstream signaling pathways activated by SLF, with particular emphasis on signaling differences associated with soluble vs membrane- bound ligand, and our identification of an important role for PLC activation and Ca2+ influx in supporting c-Kit positive cells in vitro and in vivo. This work led to the identification of a unique form of cell death termed activation enhanced cell death (AECD) that involves stimulating a cell with a growth or activation signal while concurrently blocking Ca2+ influx. Approaches that we have taken toward identifying cellular factors associated with sensitivity and resistance to AECD are summarized, as is our experience with a variety of experimental models. The use of econazole as a calcium channel blocker and its mechanism of action are described, as is its potential for development as an anticancer therapeutic.
2. The Steel factor
A E Namen, M B Widmer, S D Lyman, P de Vries, D E Williams Dev Biol . 1992 Jun;151(2):368-76. doi: 10.1016/0012-1606(92)90176-h.
Steel factor (SLF) is a recently identified growth factor which is the gene product of the murine Steel locus and a ligand for the c-kit tyrosine kinase receptor, the product of the dominant white spotting locus (W). Defects at these genetic loci result in aberrant melanocyte, germ cell, and hematopoietic development. Both the receptor (c-kit) and the ligand (SLF) have been shown to undergo tissue-specific mRNA splicing to produce distinct isoforms which have unique biological functions. As predicted by the phenotype of these mutations, SLF influences the growth and differentiation of melanocytes, primordial germ cells, and a broad spectrum of cell types in the hematopoietic progenitor and stem cell hierarchy. SLF has also been shown to have effects on hematopoietic lineages not predicted by defects seen in the Steel mouse.
3. SCF(SLF)-mediated cytosolic degradation of S-RNase is required for cross-pollen compatibility in S-RNase-based self-incompatibility in Petunia hybrida
Yu'e Zhang, Jiangbo Fan, Yongbiao Xue, Wei Liu, Qun Li, Junhui Li, Yanzhai Song Front Genet . 2014 Jul 22;5:228. doi: 10.3389/fgene.2014.00228.
Many flowering plants adopt self-incompatibility (SI) to maintain their genetic diversity. In species of Solanaceae, Plantaginaceae, and Rosaceae, SI is genetically controlled by a single S-locus with multiple haplotypes. The S-locus has been shown to encode S-RNases expressed in pistil and multiple SLF (S-locus F-box) proteins in pollen controlling the female and male specificity of SI, respectively. S-RNases appear to function as a cytotoxin to reject self-pollen. In addition, SLFs have been shown to form SCF (SKP1/Cullin1/F-box) complexes to serve as putative E3 ubiquitin ligase to interact with S-RNases. Previously, two different mechanisms, the S-RNase degradation and the S-RNase compartmentalization, have been proposed as the restriction mechanisms of S-RNase cytotoxicity allowing compatible pollination. In this study, we have provided several lines of evidence in support of the S-RNase degradation mechanism by a combination of cellular, biochemical and molecular biology approaches. First, both immunogold labeling and subcellular fractionation assays showed that two key pollen SI factors, PhS3L-SLF1 and PhSSK1 (SLF-interacting SKP1-like1) from Petunia hybrida, a Solanaceous species, are co-localized in cytosols of both pollen grains and tubes. Second, PhS3L-RNases are mainly detected in the cytosols of both self and non-self-pollen tubes after pollination. Third, we found that PhS-RNases selectively interact with PhSLFs by yeast two-hybrid and co-immunoprecipitation assays. Fourth, S-RNases are specifically degraded in compatible pollen tubes by non-self SLF action. Taken together, our results demonstrate that SCF(SLF-mediated) non-self S-RNase degradation occurs in the cytosol of pollen tube through the ubiquitin/26S proteasome system serving as the major mechanism to neutralize S-RNase cytotoxicity during compatible pollination in P. hybrida.

SLF is a FKBP-family ligand intended for use as the target-engaging component or reference ligand in PROTAC discovery workflows. Its known small-molecule recognition profile enables rational linker-vector evaluation and comparative degrader design. This molecule is described in detail below.

Structure: The structure of SLF is characterized by carboxylic acid or carboxylate handle; primary or secondary amine/basic nitrogen centers; macrocyclic or peptidomimetic scaffold. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.

Reactivity: The acid handle supports amide coupling with amino-PEG, alkyl-diamine, piperazine, or aminoalkyl E3-ligase ligands. For FKBP-directed chemical biology, it may be connected to degradation or dimerization modules through flexible PEG/alkyl or amide-containing linkers, subject to FKBP-binding SAR. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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