Acs-PEG4-propargyl is a heterobifunctional PEG linker with a protected thiol and a terminal alkyne. Structurally, it contains a thioacetate-protected thiol connected through PEG4 to a terminal propargyl group. The terminal alkyne undergoes CuAAC with azide-bearing partners, while hydrolysis or another suitable deprotection of the thioacetate reveals a free thiol for reaction with maleimides, haloacetamides, activated disulfides, or other thiol-selective electrophiles. In PROTAC and related targeted protein degradation research, the two differentiated handles support staged click conjugation and thiol-directed attachment. Its defined architecture allows researchers to evaluate how linker polarity, flexibility, attachment sequence, and terminal-group selection influence conjugate preparation and the spatial requirements of productive target–E3 ligase engagement. Clear assignment of the protected and reactive groups also supports reproducible reaction planning and systematic comparison of alternative linker designs in research-focused targeted protein degradation workflows.
Structure of 1422540-88-2
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Acs-PEG4-propargyl is a PEG-based PROTAC linker building block designed to connect target-binding ligands through a terminal propargyl handle, enabling efficient conjugation workflows that support targeted protein degradation strategies. Its flexible polyethylene glycol segment can help modulate solubility and linker presentation, while the alkynyl functionality supports robust click-type coupling. The following points describe the linker’s structure and the practical reactivity considerations for PROTAC assembly in detail below.
Structure: This linker contains a polyethylene glycol chain terminating in a propargyl group, providing an ether-rich, flexible scaffold. The key functional motif is a terminal carbon–carbon triple bond, accompanied by ether linkages that contribute to polarity, water compatibility, and conformational mobility.
Reactivity: The terminal alkyne is suitable for copper-catalyzed azide–alkyne cycloaddition with azide-bearing partners under standard “click” conditions. Typical approaches employ Cu(I) generated in situ from copper salts with a reducing agent, using polar organic/aqueous solvent mixtures. Reaction proceeds via formation of a copper-acetylide intermediate followed by cycloaddition to form a stable triazole linkage, enabling modular PROTAC synthesis.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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