Biotin-PEG3-hydrazide

 CAS No.: 1381861-94-4  Cat No.: BP-501318  Purity: >95% 4.5  

Biotin-PEG3-hydrazide is a heterobifunctional linker combining a biotin handle with a short polyethylene glycol spacer and a terminal hydrazide for covalent coupling. The PEG3 segment provides aqueous solubility and spatial separation, reducing steric interference between the biotin moiety and the hydrazide-reactive group. In PROTAC and targeted protein degradation workflows, this linker is valuable as a modular attachment point: the biotin enables strong, high-affinity capture or enrichment using streptavidin/avidin reagents, while the hydrazide can be used to form hydrazone linkages with aldehyde-bearing partners under mild conditions, facilitating conjugation to targeting or reporting components. Researchers can exploit this design to assemble degraders or assay constructs with improved handling, purification, and controlled attachment chemistry, supporting studies that require efficient immobilization, pull-down validation of ternary-complex formation, or streamlined characterization of degradation ligands.

Biotin-PEG3-hydrazide

Structure of 1381861-94-4

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Category
PROTAC Linker
Molecular Formula
C₁₉H₃₅N₅O₆S
Molecular Weight
461.58
Appearance
White Solid

* For research and manufacturing use only. Not for human or clinical use.

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Purity
>95%
Appearance
White Solid
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-N-[2-[2-[2-(3-hydrazinyl-3-oxopropoxy)ethoxy]ethoxy]ethyl]pentanamide
Synonyms
(+)-Biotin-PEG3-hydrazide; (+)-Biotin-PEG3-NHNH2
Boiling Point
813.7±65.0 °C at 760 mmHg
Density
1.2±0.1 g/cm3
InChI Key
DLMSZDYSRRYIJV-MPGHIAIKSA-N
InChI
InChI=1S/C19H35N5O6S/c20-24-17(26)5-7-28-9-11-30-12-10-29-8-6-21-16(25)4-2-1-3-15-18-14(13-31-15)22-19(27)23-18/h14-15,18H,1-13,20H2,(H,21,25)(H,24,26)(H2,22,23,27)/t14-,15-,18-/m0/s1
SMILES
C1C2C(C(S1)CCCCC(=O)NCCOCCOCCOCCC(=O)NN)NC(=O)N2

Biotin-PEG3-hydrazide is a polyethylene glycol (PEG)-based linker designed to support PROTAC assembly by combining a hydrazide functional group with a biotin handle for downstream conjugation and analytical workflows. Its flexible, ether-rich PEG segment promotes productive ternary-complex formation and improves solubility, while the hydrazide enables chemoselective coupling to carbonyl-bearing partners commonly used in targeted degradation strategies. The structure and reactivity considerations are described in detail below.

Structure: The linker contains a PEG chain featuring ether linkages that confer conformational flexibility and enhanced aqueous compatibility. A terminal hydrazide provides an electrophilic carbonyl for condensation chemistry, while the biotin moiety offers a high-affinity recognition element. Overall, it is an amide/ hydrazide-containing, polar, and water-soluble construct.

Reactivity: The hydrazide group is suitable for carbonyl-activation/condensation-based conjugation, including formation of hydrazone linkages with aldehyde or ketone partners under mild, dehydrating conditions. Typical PROTAC-building workflows employ controlled pH, inert atmosphere when required, and polar organic solvents compatible with PEG and amide stability. Reaction progress is often monitored by chromatographic or spectroscopic methods, and coupling is generally driven by equilibrium toward product formation.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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