Fmoc-N-amido-PEG8-acetic acid is a polyethylene glycol–based linker building block bearing an N-terminal Fmoc-protected amide and a terminal acetic acid functionality, enabling robust solid-phase or solution-phase conjugation chemistry. Structurally, it provides a flexible, hydrophilic PEG chain of defined length that can act as a spacer between a ligand (e.g., E3 ligase binder or target-binding moiety) and the remainder of a PROTAC construct, helping to reduce steric interference and improve effective contact with the recruited proteins. In targeted protein degradation workflows, this linker is used to connect functional groups through amide-forming reactions, allowing researchers to tune linker geometry, solubility, and the conformational freedom that influences ternary complex formation and degradation efficiency. Its modular design supports systematic structure–activity relationship studies, where varying PEG spacing and attachment chemistry can be used to optimize degradation potency, selectivity, and experimental handling.
Structure of 868594-52-9
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Fmoc-N-amido-PEG8-acetic acid is a PEG-based PROTAC linker reagent designed to introduce a hydrophilic, flexible spacer that can improve solubility and spatial compatibility between ligands. The Fmoc-protected amide functionality enables controlled stepwise assembly, while the terminal acetic acid provides a reactive handle for further conjugation. Its balanced polarity and conformational flexibility make it suitable for constructing degraders where linker length and attachment chemistry strongly influence ternary complex formation. Detailed structural and reactivity guidance is provided below.
Structure: The linker contains an Fmoc-protected amide connected to an oligo(ethylene glycol) chain, terminating in an acetic acid group. It features aromatic carbamate, amide, ether linkages, and a carboxylic acid, yielding a polar, water-compatible scaffold with conformational flexibility.
Reactivity: The Fmoc group supports orthogonal protection strategies; deprotection is typically performed under base conditions to unmask the amine for coupling. The terminal carboxylic acid can be activated for amide-bond formation using standard peptide-coupling chemistries, commonly employing coupling reagents with amine partners in suitable polar aprotic solvents. Reaction design should preserve PEG integrity and avoid harsh conditions that cause side reactions or degradation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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