Bis-PEG13-NHS ester is a heterobifunctional PEG-based linker featuring two terminal N-hydroxysuccinimide (NHS) ester groups separated by a long, flexible poly(ethylene glycol) chain. The dual NHS handles enable efficient formation of stable amide bonds with primary amines present on PROTAC-relevant ligands, such as lysine residues on peptides or engineered amine-functionalized small molecules, allowing conjugation to two components in a controlled, distance-tunable manner. In PROTAC design, this linker serves as a spacer that can reduce steric clashes, improve solubility, and help optimize the effective geometry between the target-binding moiety and the E3-ligase ligand to promote formation of the ternary complex. Its PEG architecture is widely used to enhance aqueous compatibility and facilitate reproducible synthesis of multi-component degraders, supporting systematic structure–activity studies of linker length and conjugation stoichiometry in targeted protein degradation research.
Structure of 2221949-00-2
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This Bis-PEG13-NHS ester is a bifunctional polyethylene glycol linker designed for efficient conjugation in PROTAC workflows, enabling the installation of amine-reactive handles on targeting ligands and/or E3 ligase binders. Its PEG architecture provides enhanced solubility and reduced nonspecific interactions, while the NHS ester functionality supports robust coupling under mild conditions. The following sections describe the linker’s structure and practical reactivity considerations in detail.
Structure: The molecule is a bis-functional PEG-based linker bearing N-hydroxysuccinimide ester groups at its termini. It contains ether-rich PEG segments that impart flexibility, hydrophilicity, and conformational mobility, with reactive acyl–oxygen bonds characteristic of NHS esters.
Reactivity: NHS esters react with primary amines to form stable amide linkages via nucleophilic acyl substitution. For PROTAC assembly, conjugate the linker to amine-containing ligands using mildly basic aqueous or mixed-solvent conditions, typically with buffers that maintain amine nucleophilicity while limiting hydrolysis. Avoid prolonged exposure to water and strong nucleophiles; no special catalysts are generally required, but careful control of pH and stoichiometry helps favor mono- or bis-conjugation as desired.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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