TCO-PEG6-acid is a PEG-based linker bearing a trans-cyclooctene (TCO) reactive handle and a terminal carboxylic acid for conjugation. Structurally, it combines a flexible oligo(ethylene glycol) spacer that improves solubility and reduces steric constraints with a bioorthogonal TCO moiety capable of undergoing rapid, selective inverse-electron-demand Diels–Alder chemistry with tetrazines. In PROTAC and targeted protein degradation workflows, this linker is used to connect or functionalize PROTAC components such that the TCO group can be installed on one binding module (e.g., a ligand for a target protein or an E3 ligase) and then coupled to a complementary tetrazine-functional partner, enabling efficient assembly under mild conditions. The terminal acid provides a practical site for amide coupling or other carboxylate-reactive conjugation strategies. Overall, TCO-PEG6-acid supports modular PROTAC construction, helps maintain favorable linker flexibility, and facilitates controlled, high-yield ligation for experimental degradation studies.
Structure of 2353409-97-7
* For research and manufacturing use only. Not for human or clinical use.
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TCO-PEG6-acid is a polyethylene glycol-based PROTAC linker designed to connect targeting and recruiting modules while providing aqueous compatibility and conformational flexibility. Its acid functionality enables robust coupling to amine-bearing or activated partners, supporting modular PROTAC assembly. The linker’s bioorthogonal reactive handle supports efficient conjugation strategies commonly used in targeted protein degradation workflows, and the subsequent sections describe its structural traits and practical reactivity considerations in detail below.
Structure: The linker comprises a PEG chain terminating in a carboxylic acid, providing a hydrophilic, flexible scaffold. It contains ether linkages within the PEG segment and a terminal carboxyl group capable of forming amide or ester derivatives. The overall structure supports solubility and spacer behavior in conjugates.
Reactivity: The carboxylic acid can be converted to activated intermediates for amide bond formation, typically using coupling reagents compatible with peptide/bioconjugation chemistry. For PROTAC construction, coupling is commonly performed under mild base conditions in polar aprotic solvents, followed by purification to remove excess reagents. The TCO-related functionality is generally employed in bioorthogonal conjugation schemes that proceed via strain-promoted cycloaddition, enabling efficient attachment without requiring metal catalysts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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