Biotin-PEG3-NHS ester

 CAS No.: 1253286-56-4  Cat No.: BP-501577  Purity: >97% 4.5  

Biotin-PEG3-NHS ester is a heterobifunctional PEG-based linker that combines a biotin affinity handle with an N-hydroxysuccinimide (NHS) ester for amide-bond formation. Structurally, it features a short polyethylene glycol chain that provides aqueous solubility and spatial separation between the biotin moiety and the reactive NHS group, enabling efficient conjugation to primary amines on proteins, peptides, or other amine-containing ligands. In PROTAC and targeted degradation workflows, this type of linker is used to install biotin tags on one component or on a carrier scaffold, facilitating downstream affinity capture, enrichment, and detection (e.g., pull-down and immunoblotting using streptavidin/avidin). The PEG spacer helps preserve binding and degradation-relevant interactions by reducing steric interference. Its utility lies in streamlining experimental characterization and purification of conjugated PROTAC constructs or intermediate synthesis products while maintaining robust aqueous handling.

Biotin-PEG3-NHS ester

Structure of 1253286-56-4

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PROTAC Linker
Molecular Formula
C23H36N4O9S
Molecular Weight
544.62
Appearance
White Waxy

* For research and manufacturing use only. Not for human or clinical use.

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Purity
>97%
Appearance
White Waxy
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
(2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[2-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]propanoate
Synonyms
3-[2-[2-[2-[[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-1-oxopentyl]amino]ethoxy]ethoxy]ethoxy]propanoic acid (2,5-dioxo-1-pyrrolidinyl) ester; (2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[2-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]propanoate
InChI Key
QIAUJZJSFIYGMH-HOIFWPIMSA-N
InChI
InChI=1S/C23H36N4O9S/c28-18(4-2-1-3-17-22-16(15-37-17)25-23(32)26-22)24-8-10-34-12-14-35-13-11-33-9-7-21(31)36-27-19(29)5-6-20(27)30/h16-17,22H,1-15H2,(H,24,28)(H2,25,26,32)/t16-,17-,22-/m0/s1
SMILES
C1CC(=O)N(C1=O)OC(=O)CCOCCOCCOCCNC(=O)CCCCC2C3C(CS2)NC(=O)N3

Biotin-PEG3-NHS ester is a PEG-based bioconjugation linker designed for efficient attachment of biotin tags to primary amines in PROTAC-related workflows. Its NHS ester functionality enables robust coupling under mild conditions, while the PEG spacer improves solubility and reduces steric constraints between the biotin handle and target-binding modules. The linker is well suited for preparing biotinylated PROTAC constructs for downstream affinity enrichment, characterization, and pull-down studies; detailed structural and reactivity guidance is provided below.

Structure: The linker contains a poly(ethylene glycol) spacer terminating in an N-hydroxysuccinimide ester, coupled to a biotin moiety. It features amide-forming ester reactivity, ether-rich PEG segments, and heteroatom-rich functional groups that enhance hydrophilicity and conformational flexibility.

Reactivity: The NHS ester reacts with primary amines via nucleophilic acyl substitution to form stable amide bonds, typically using buffered aqueous or mixed solvent systems at conditions that maintain NHS ester integrity. Common approaches include activating the amine-bearing partner, controlling pH to favor amine nucleophilicity, and using mild bases or amine-free buffers to minimize hydrolysis. No special catalysts are required; efficient coupling depends on minimizing water exposure and promptly quenching unreacted ester.

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L

* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
g/mol
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